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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36041968_36045000_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36041968 - 36045000
Intron Length:
3033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTACATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTACAT
U12 Branch Point Sequence:
TTTTCTGGTACA
Flanking Amino Acid:
RQPGCYTLALRFGNQTLNYR
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
66.3
0.37
1
59.2
41.1
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
47.8
-0.1
2.4
71.77
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032394
35949884 - 36063128
113245
ENSAPLT00000004928
35999942 - 36111027
111086
ENSAPLT00000045303
35879485 - 36111027
231543
ENSAPLT00000044574
35949884 - 36111027
161144