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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36045287_36087176_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36045287 - 36087176
Intron Length:
41890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTATTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
ACCTCTGAAACT
Flanking Amino Acid:
TSEENTPVEKITSLVRRAAL
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
74.7
0.56
0.9
68.9
36
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
46.7
-0.1
2.3
65.07
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044574
35949884 - 36111027
161144
ENSAPLT00000004928
35999942 - 36111027
111086
ENSAPLT00000045303
35879485 - 36111027
231543