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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36093926_36096769_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36093926 - 36096769
Intron Length:
2844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCCAC
5'SS Class:
major
3'SS Sequence:
ACTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAAGT
Flanking Amino Acid:
GLIAQGVRCSDCGLNVHKQC
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
54.1
45.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82
0.72
0.9
73.1
41.5
Minor 5ss
42.3
-0.8
3.3
58.6
46.2
Minor BPS
67.6
0.63
1.9
86.33
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045303
35879485 - 36111027
231543
ENSAPLT00000044574
35949884 - 36111027
161144
ENSAPLT00000004928
35999942 - 36111027
111086