Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36096944_36098794_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36096944 - 36098794

Intron Length:

1851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTTGTATG

5'SS Class:

major

3'SS Sequence:

CTTCTTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

TAACCAAGAACT

Flanking Amino Acid:

DSCIREIEARGLKSEGLYRV

Intron Amino Acid Position:

298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

75.6

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

85.8

0.81

0.8

83.9

31.1

Minor 5ss

41.8

-0.9

2.5

51.4

45.2

Minor BPS

46.5

-0.1

1.9

67.88

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004770

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045303

35879485 - 36111027

231543

ENSAPLT00000044574

35949884 - 36111027

161144

ENSAPLT00000004928

35999942 - 36111027

111086