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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36105998_36107247_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36105998 - 36107247
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GGTGTTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAACATTAATC
Flanking Amino Acid:
DTYSKFIEAAKISNPDERLE
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
79.2
0.66
1
72.2
42.7
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
64.9
0.45
1.6
73.67
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045303
35879485 - 36111027
231543
ENSAPLT00000044574
35949884 - 36111027
161144
ENSAPLT00000004928
35999942 - 36111027
111086