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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36107354_36110855_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36107354 - 36110855
Intron Length:
3502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
TLRYLMIHLKKVTLHEKENF
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.1
0.74
0.7
81.9
28.4
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004770
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044574
35949884 - 36111027
161144
ENSAPLT00000004928
35999942 - 36111027
111086
ENSAPLT00000045303
35879485 - 36111027
231543