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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36171701_36184464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36171701 - 36184464
Intron Length:
12764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATCG
5'SS Class:
strong_major
3'SS Sequence:
ATATTGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTGTACCT
Flanking Amino Acid:
SGGPPPPPPLASSELPKLRK
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
68.5
0.42
1
63
42.3
Minor 5ss
38.4
-1.3
3
45.8
43.3
Minor BPS
54.3
0.21
2.3
80.24
42

Associated Gene:

Gene:
WIPF3
Ensembl Gene ID:
ENSAPLG00000028949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028007
36171532 - 36190731
19200