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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36185907_36187356_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36185907 - 36187356
Intron Length:
1450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TGGTGTATAACA
Flanking Amino Acid:
LRPAGQRDLPAGRPGQLPGV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
86.7
0.82
0.7
84.6
29.5
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
49.5
-0
2
64.71
41.8

Associated Gene:

Gene:
WIPF3
Ensembl Gene ID:
ENSAPLG00000028949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028007
36171532 - 36190731
19200