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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36188089_36189601_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36188089 - 36189601
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGATCTTCATGT
Flanking Amino Acid:
TRKKRAGRGGGPGAGKLAVP
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
88.9
0.87
0.6
87.4
22.9
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
46.6
-0.1
2
65.72
44.7

Associated Gene:

Gene:
WIPF3
Ensembl Gene ID:
ENSAPLG00000028949
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028007
36171532 - 36190731
19200