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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36196309_36198219_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36196309 - 36198219
Intron Length:
1911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGATTTTAAAC
Flanking Amino Acid:
WARSLLESDQLQWLLLAFSQ
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.4
0.68
0.9
77.2
36.6
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
55
0.14
1.4
60.56
38.5

Associated Gene:

Gene:
SCRN1
Ensembl Gene ID:
ENSAPLG00000004515
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036441
36196045 - 36220110
24066