Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36202647_36205626_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36202647 - 36205626

Intron Length:

2980

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTCCAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTTCTTCTAATT

Flanking Amino Acid:

GKYWAAEKITEGVKCICNQL

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

77.7

33.5

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

67.1

0.38

0.9

62.6

33.3

Minor 5ss

35.9

-1.6

2.6

42.5

44.2

Minor BPS

61.7

0.44

1.6

81.49

Associated Gene:

Gene:

SCRN1

Ensembl Gene ID:

ENSAPLG00000004515

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036441

36196045 - 36220110

24066

ENSAPLT00000004644

36196583 - 36220110

23528