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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36239257_36240103_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36239257 - 36240103
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTACCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
AAAACTTTAACT
Flanking Amino Acid:
NDDWKLSKQEVKIYLKKEFE
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
83.6
0.76
0.8
76.7
31.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
70.6
0.72
1.2
77.67
38

Associated Gene:

Gene:
FKBP14
Ensembl Gene ID:
ENSAPLG00000004374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004493
36239098 - 36244575
5478