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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36240232_36241728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36240232 - 36241728
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CCATTATGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTGTTTCTAACT
Flanking Amino Acid:
PALAYGKEGKGKIPPESTLI
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
61.1
0.25
1.1
57.6
42.1
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
66.5
0.6
1.6
83.86
37.3

Associated Gene:

Gene:
FKBP14
Ensembl Gene ID:
ENSAPLG00000004374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004493
36239098 - 36244575
5478