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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36241881_36244375_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36241881 - 36244375
Intron Length:
2495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CATTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGCTGTTTAAAG
Flanking Amino Acid:
LQSDGAMFHSTHKHNNGQPM
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
64.3
47.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
35.7
-1.6
3.4
46.8
42.2
Minor BPS
49.9
-0.1
1.9
56.87
44.7

Associated Gene:

Gene:
FKBP14
Ensembl Gene ID:
ENSAPLG00000004374
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004493
36239098 - 36244575
5478