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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36252964_36253571_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36252964 - 36253571
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTGTCCTGAAAC
Flanking Amino Acid:
SIQMAVCEIQVHPADNTRMD
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.4
33.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
75.7
0.58
1
65.9
45.3
Minor 5ss
36
-1.6
2.6
43.2
43.8
Minor BPS
61.9
0.35
1.6
68.62
42.6

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601