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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36255154_36255803_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36255154 - 36255803
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTGTGTTGAGT
Flanking Amino Acid:
ASISGVSEPESGIDMGALLK
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
79.5
29.5
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
88.9
0.87
0.6
85.3
22.1
Minor 5ss
47.6
-0.2
2.8
64.6
46.8
Minor BPS
47.3
-0.1
2.4
73.86
43.8

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601