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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36255963_36256858_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36255963 - 36256858
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GTCTCTCTACCC
Flanking Amino Acid:
PHLAVLRTNKIKHSVLPSHT
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
74.2
35.8
Major BPS
64.9
0.37
1
67
29.8
Major PPT
86
0.81
0.8
79.9
32.3
Minor 5ss
32.6
-2
3.1
41.2
44.8
Minor BPS
49.3
-0
2
63.35
42.4

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601