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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36256900_36257644_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36256900 - 36257644
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAA
5'SS Class:
major
3'SS Sequence:
TTGCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTGTACTAACC
Flanking Amino Acid:
SVLPSHTSTERQMELNPCEN
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69
31.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
86.4
0.82
0.7
84.9
29.9
Minor 5ss
42.7
-0.8
3
55.5
48.7
Minor BPS
51.6
0.03
2
71.86
39.1

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601