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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36260276_36260814_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36260276 - 36260814
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TAATCTTAAAGT
Flanking Amino Acid:
ESCYAIVPVLDKLGPTVFAP
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
55.2
0.24
2
73.6
43.3

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601