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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36262709_36264286_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36262709 - 36264286
Intron Length:
1578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
TTTCCCTTTTTT
Flanking Amino Acid:
NGEKNIQTALNNAYGKTLRQ
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
45.4
-0.2
3.6
81.55
40.1

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601