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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36264349_36265112_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36264349 - 36265112
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTCAGTTTAAAA
Flanking Amino Acid:
HGWVVRGVFALALRAAPTYE
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
84.3
0.77
0.7
77
31.7
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
51.3
0.04
1.9
64.89
41.7

Associated Gene:

Gene:
PLEKHA8
Ensembl Gene ID:
ENSAPLG00000004301
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004422
36245060 - 36270660
25601