About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36277098_36279066_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36277098 - 36279066
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
GCTTCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTCGCTTCTATT
Flanking Amino Acid:
GYLTCKTYLPGSYGKLRCTS
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
76.7
0.6
0.8
74.2
35.2
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
47.4
-0.1
1.9
67.36
44.1

Associated Gene:

Gene:
COLQ
Ensembl Gene ID:
ENSAPLG00000004158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004275
36275525 - 36314733
39209