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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36291472_36292179_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36291472 - 36292179
Intron Length:
708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TTTTACTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACG
Flanking Amino Acid:
RGDKGVKGDQGEVGSPGMLG
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
90.1
0.9
0.7
85
29.3
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
74.9
0.64
1.2
77.64
33.4

Associated Gene:

Gene:
COLQ
Ensembl Gene ID:
ENSAPLG00000004158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004275
36275525 - 36314733
39209