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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36293946_36296134_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36293946 - 36296134
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTGACCCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATTGACC
Flanking Amino Acid:
VGWPGPVGPKGEKGDLGVMG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.7
0.47
0.9
67.3
35.1
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
64.7
0.44
1.6
74.32
36.6

Associated Gene:

Gene:
COLQ
Ensembl Gene ID:
ENSAPLG00000004158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004275
36275525 - 36314733
39209