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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36297866_36298551_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36297866 - 36298551
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACATAT
U12 Branch Point Sequence:
ATCTCTGAGACT
Flanking Amino Acid:
PGIMGPKGEKGEIGRPGRKG
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
77.6
32.3
Major BPS
57.6
0.19
1
53
33.7
Major PPT
79.6
0.67
0.9
76.8
31.8
Minor 5ss
35.7
-1.6
3.2
45.3
36.6
Minor BPS
46.2
-0.2
2.3
68.41
43.3

Associated Gene:

Gene:
COLQ
Ensembl Gene ID:
ENSAPLG00000004158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004275
36275525 - 36314733
39209