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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36298597_36301897_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36298597 - 36301897
Intron Length:
3301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGCTCAATAACA
Flanking Amino Acid:
HCPTGPPGPQGPRGIPGIMG
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.2
0.68
0.8
73.8
36.8
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
56.6
0.2
1.9
70.69
40.9

Associated Gene:

Gene:
COLQ
Ensembl Gene ID:
ENSAPLG00000004158
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004275
36275525 - 36314733
39209