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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36320650_36321421_F

Intron Information:

Intron Rank:
146991
Intron Class:
major
Intron Phase:
Intron Coordinates:
36320650 - 36321421
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGAGG
5'SS Class:
major
3'SS Sequence:
GATTTCATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCCATACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
57.6
46.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.6
0.62
0.9
70.1
39.9
Minor 5ss
29.6
-2.3
3.4
39.2
46.3
Minor BPS
61.1
0.43
2
86.5
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033099
36319961 - 36323193
3233