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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36325570_36325930_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36325570 - 36325930
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TTTTGGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATTTTATTC
Flanking Amino Acid:
IDPQSDRKKQEFPWLTRSNL
Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.8
0.74
0.9
73.5
41.8
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
49.3
-0
1.5
57.46
35.5

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164