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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36326118_36326708_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36326118 - 36326708
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
TGTTTCACTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTCTGTTTCACT
Flanking Amino Acid:
EMLQYGDPATCVPPVSLLPN
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
74
36.6
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
81
0.7
0.9
74.9
34.7
Minor 5ss
38.6
-1.3
3
48.9
41.6
Minor BPS
55.2
0.25
2.2
78.9
44

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164