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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36327272_36328653_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36327272 - 36328653
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTAT
5'SS Class:
major
3'SS Sequence:
TTCTCACCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTGTTCTCACCT
Flanking Amino Acid:
TMLPNYYPRQRLDAGTFGTM
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
73.5
33
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.3
0.61
0.7
74.9
29.1
Minor 5ss
39
-1.2
3.3
54.5
49.7
Minor BPS
53.4
0.18
1.9
72.42
44.5

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164