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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36330940_36332080_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36330940 - 36332080
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAATATA
5'SS Class:
major
3'SS Sequence:
TGTACCTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTTCTGTACCT
Flanking Amino Acid:
HPNCVAAARSTALQHADVVI
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
80.4
34.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.7
0.58
0.9
69.2
36.9
Minor 5ss
40
-1.1
2.9
50
39.9
Minor BPS
53.8
0.2
2.3
78.9
44

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164