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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36332217_36332714_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36332217 - 36332714
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCATGC
5'SS Class:
major
3'SS Sequence:
TCGTTTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCGTTTCATT
Flanking Amino Acid:
AKQPLLIIGKGAAYSHAENN
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.8
42.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.3
0.66
0.9
77.7
35.8
Minor 5ss
42.4
-0.8
3.2
59.5
45.2
Minor BPS
49.8
0.07
2.1
76.64
40.8

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164