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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36332828_36333285_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36332828 - 36333285
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTACA
5'SS Class:
major
3'SS Sequence:
GCATGTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTC
Flanking Amino Acid:
VNLEVNKSSVKYVECCPPPP
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.6
35.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.7
0.56
1
65
45.4
Minor 5ss
36.7
-1.5
2.9
43.3
37.8
Minor BPS
51.7
0.03
1.9
70.01
36

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164