Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36334477_36334982_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36334477 - 36334982

Intron Length:

506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACACAGA

5'SS Class:

major

3'SS Sequence:

TTGATTTATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

ATGCATTTAACC

Flanking Amino Acid:

TMGAFQEFPQVEAGRLYNKL

Intron Amino Acid Position:

121

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

62.4

43.9

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

75.1

0.57

0.9

74.4

40.4

Minor 5ss

-1.5

3.2

49.1

46.7

Minor BPS

60.8

0.32

1.5

67.31

37.9

Associated Gene:

Gene:

HACL1

Ensembl Gene ID:

ENSAPLG00000003680

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003801

36325379 - 36343542

18164