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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36335056_36337467_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36335056 - 36337467
Intron Length:
2412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTAA
5'SS Class:
major
3'SS Sequence:
AATCCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
GGMANATVNCWPLIVIGGSS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
74.8
30.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.9
0.56
0.9
66.4
39.7
Minor 5ss
39.7
-1.2
2.8
46.3
44.2
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164