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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36337549_36338730_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36337549 - 36338730
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTCC
5'SS Class:
major
3'SS Sequence:
TCCTTCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
ATTTCAGCATCT
Flanking Amino Acid:
AASAIGYLTGRPGVCLVVSG
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.3
36.3
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
77.7
0.62
0.7
70
31
Minor 5ss
39.7
-1.1
3.1
53.8
43.4
Minor BPS
43.6
-0.4
2.5
72.07
44.4

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164