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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36342620_36343482_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36342620 - 36343482
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGGCTTCTAACG
Flanking Amino Acid:
QLVAEALRAQNIEYMFGIVG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
71.8
33.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
32.2
-2
3.6
42.5
38.7
Minor BPS
48.4
-0.2
1.7
53.76
41.2

Associated Gene:

Gene:
HACL1
Ensembl Gene ID:
ENSAPLG00000003680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003801
36325379 - 36343542
18164