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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36346741_36348197_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36346741 - 36348197
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAC
5'SS Class:
major
3'SS Sequence:
GTTTTATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTGTTTTATAT
Flanking Amino Acid:
EQQVMAAARQGAQIIVFPED
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65
41.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
79.6
0.67
1
73.8
40
Minor 5ss
44.3
-0.6
2.8
58.6
46.2
Minor BPS
54.6
0.22
1.8
76.11
41

Associated Gene:

Gene:
BTD
Ensembl Gene ID:
ENSAPLG00000003612
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003689
36343893 - 36351456
7564
ENSAPLT00000047037
36345244 - 36351456
6213