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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36367003_36367139_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36367003 - 36367139
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTGTTATAT
Flanking Amino Acid:
NTALHLACSKGHETSALLIL
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
71.3
34.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
64.9
0.33
1.2
68.2
41.7
Minor 5ss
26.5
-2.7
3.1
32.6
42.2
Minor BPS
48.4
-0
2.3
73.91
42.8

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518