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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36367223_36367399_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36367223 - 36367399
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
TTATTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AAATCTTTATTT
Flanking Amino Acid:
AAENGQTNTVEVLVSSAKAD
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.1
39.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
81.2
0.7
0.8
74.1
36.5
Minor 5ss
28.1
-2.5
3.5
34.8
43.6
Minor BPS
60.9
0.42
1.5
72.35
38.8

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518
ENSAPLT00000041612
36360481 - 36435288
74808