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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36368318_36369730_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36368318 - 36369730
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACATG
5'SS Class:
major
3'SS Sequence:
ACATTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTATAATA
Flanking Amino Acid:
YTSLHWACYNGHDSCVELLL
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.8
43.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
0.8
74.3
35.7
Minor 5ss
42.5
-0.8
3
54
44.5
Minor BPS
60.5
0.33
1.6
71.1
35.7

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518