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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36369951_36370569_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36369951 - 36370569
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTCTCTTTCTCT
Flanking Amino Acid:
KWGRTALHRGAVTGHEECVE
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
34.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.9
0.72
0.7
80
25.3
Minor 5ss
29.3
-2.4
3.3
29.9
43.1
Minor BPS
42.2
-0.5
3.6
70.73
46.8

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518