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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36370688_36371118_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36370688 - 36371118
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
ACTCTCTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACTTCATT
Flanking Amino Acid:
NAVDIQDGNGQTPLMLSVLN
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
70.5
0.46
0.9
65.8
35.3
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
59.5
0.38
1.9
82.51
38.8

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518