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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36381371_36382967_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
36381371 - 36382967
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTACTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAT
Flanking Amino Acid:
ADFNKKDRFGRTPLHYAAAN
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
59.2
0.21
1.2
57.5
41.9
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
73.4
0.81
1.5
90.39
32.8

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518
ENSAPLT00000041612
36360481 - 36435288
74808