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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36383037_36384317_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36383037 - 36384317
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTAATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATTGCATTAATT
Flanking Amino Acid:
RTCLHAAAAGGNLECLNLLL
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
72.1
0.5
1
66.5
43.1
Minor 5ss
40.7
-1
2.5
42.1
44.8
Minor BPS
67.6
0.63
1.7
83.58
37.4

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002624
36360771 - 36435288
74518
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554