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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36387691_36388125_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36387691 - 36388125
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TGGTGTATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATGAAAC
Flanking Amino Acid:
TLITSGADTAKRGIHGMFPL
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.1
35.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
65.7
0.35
1
62.9
43
Minor 5ss
36.3
-1.5
3
45
37.2
Minor BPS
47.4
-0.2
2
63.38
41.1

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518
ENSAPLT00000041612
36360481 - 36435288
74808