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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36394729_36396063_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36394729 - 36396063
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
TTGTTGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TATTAACTAACT
Flanking Amino Acid:
VKYLLDLGVDMNEPNAYGNT
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
71.6
39.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
75.7
0.58
1.1
72.2
42.7
Minor 5ss
34
-1.8
3.2
44.2
43.7
Minor BPS
54.1
0.21
2.1
80.97
39.6

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002624
36360771 - 36435288
74518
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554