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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36396207_36400415_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36396207 - 36400415
Intron Length:
4209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTTATTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTC
Flanking Amino Acid:
RRAIHWAAYMGHIEVVKLLV
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.3
37.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86.7
0.83
0.7
85.7
28.9
Minor 5ss
41.7
-0.9
2.4
43.6
43.6
Minor BPS
66.3
0.49
1.5
73.61
38.2

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554
ENSAPLT00000002624
36360771 - 36435288
74518