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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36404613_36414286_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36404613 - 36414286
Intron Length:
9674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACATTGTTAATT
Flanking Amino Acid:
AEIIELLILSGARVNAKDSK
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
34.6
Major BPS
100
1.24
0.5
100
0
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
47.7
-0.2
2.4
59.1
40.8
Minor BPS
54.4
0.22
2
70.25
41.4

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041612
36360481 - 36435288
74808
ENSAPLT00000040748
36360481 - 36475034
114554