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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36434080_36475007_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36434080 - 36475007
Intron Length:
40928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
MVFLKLREQPPLVQAIFNG
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.4
0.84
0.7
85.5
27.4
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
ANKRD28
Ensembl Gene ID:
ENSAPLG00000002501
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040748
36360481 - 36475034
114554